NWB Widgets
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Contents:
Installation
Running NWB widgets on Jupyter
Running NWB widgets remotely
Developer’s guide
Neurodata Widgets:
Neurodata widgets
API reference:
nwbwidgets
NWB Widgets
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Index
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Index
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C
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D
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F
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H
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I
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L
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M
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N
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O
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W
A
AbstractGroupAndSortController (class in nwbwidgets.controllers.group_and_sort_controllers)
AbstractTraceWidget (class in nwbwidgets.timeseries)
align_by_time_intervals() (in module nwbwidgets.utils.timeseries)
(in module nwbwidgets.utils.units)
align_by_times() (in module nwbwidgets.utils.units)
align_by_times_with_rate() (in module nwbwidgets.utils.timeseries)
align_by_times_with_timestamps() (in module nwbwidgets.utils.timeseries)
align_by_trials() (in module nwbwidgets.utils.timeseries)
(in module nwbwidgets.utils.units)
align_data() (nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsConstant method)
(nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsVariable method)
align_timestamps_by_trials() (in module nwbwidgets.utils.timeseries)
AlignMultiTraceTimeSeriesByTrialsAbstract (class in nwbwidgets.timeseries)
AlignMultiTraceTimeSeriesByTrialsConstant (class in nwbwidgets.timeseries)
AlignMultiTraceTimeSeriesByTrialsVariable (class in nwbwidgets.timeseries)
allen_show_dynamic_table() (in module nwbwidgets.allen)
allen_show_electrodes() (in module nwbwidgets.allen)
AllenPSTHWidget (class in nwbwidgets.allen)
AllenRasterGridWidget (class in nwbwidgets.allen)
AllenRasterGroupAndSortController (class in nwbwidgets.allen)
AllenRasterWidget (class in nwbwidgets.allen)
AllenTuningCurveWidget (class in nwbwidgets.allen)
ascending_dd_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
B
BaseGroupedTraceWidget (class in nwbwidgets.timeseries)
bisect_timeseries_by_times() (in module nwbwidgets.utils.timeseries)
C
cancel() (nwbwidgets.utils.widgets.Timer method)
check_spectrum() (in module nwbwidgets.spectrum)
clean_axes() (in module nwbwidgets.utils.widgets)
color_electrode_by() (nwbwidgets.brains.HumanElectrodesPlotlyWidget method)
compute_outline() (nwbwidgets.ophys.PlaneSegmentation2DWidget method)
compute_smoothed_firing_rate() (in module nwbwidgets.analysis.spikes)
create_big_ax() (in module nwbwidgets.utils.mpl)
create_components_dandi_source() (nwbwidgets.panel.Panel method)
create_components_local_dir_source() (nwbwidgets.panel.Panel method)
create_components_local_file_source() (nwbwidgets.panel.Panel method)
create_components_s3_source() (nwbwidgets.panel.Panel method)
D
dataset_to_sheet() (in module nwbwidgets.base)
debounce() (in module nwbwidgets.utils.widgets)
DEFAULT_DURATION (nwbwidgets.controllers.time_window_controllers.StartAndDurationController attribute)
df2accordion() (in module nwbwidgets.base)
df_to_hover_text() (in module nwbwidgets.base)
dict2accordion() (in module nwbwidgets.base)
dicts_approximate_equal() (in module nwbwidgets.utils.testing)
dicts_exact_equal() (in module nwbwidgets.utils.testing)
draw_tuning_curve() (in module nwbwidgets.misc)
draw_tuning_curve_1d() (in module nwbwidgets.misc)
draw_tuning_curve_2d() (in module nwbwidgets.misc)
DynamicTableSummaryWidget (class in nwbwidgets.dynamictablesummary)
E
ElectricalSeriesWidget (class in nwbwidgets.ecephys)
ElectrodeGroupsWidget (class in nwbwidgets.ecephys)
event_group() (in module nwbwidgets.utils.plotly)
extract_data_from_intervals() (in module nwbwidgets.utils.dynamictable)
F
fig2widget() (in module nwbwidgets.base)
find_normals() (nwbwidgets.brains.HumanElectrodesPlotlyWidget static method)
G
get_all_dandisets_metadata() (in module nwbwidgets.utils.dandi)
get_children() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
(nwbwidgets.controllers.time_window_controllers.RangeController method)
(nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
(nwbwidgets.controllers.time_window_controllers.WindowController method)
get_column_values() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
get_dandiset_metadata() (in module nwbwidgets.utils.dandi)
get_file_url() (in module nwbwidgets.utils.dandi)
get_frame() (nwbwidgets.image.ImageSeriesWidget method)
get_group_vals() (nwbwidgets.allen.AllenRasterGroupAndSortController method)
get_groups() (nwbwidgets.allen.AllenRasterGroupAndSortController method)
(nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
(nwbwidgets.misc.UnitsAndTrialsControllerWidget method)
get_max_spike_time() (in module nwbwidgets.utils.units)
get_min_spike_time() (in module nwbwidgets.utils.units)
get_orderable_cols() (nwbwidgets.allen.AllenRasterGroupAndSortController method)
(nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
get_spike_times() (in module nwbwidgets.utils.units)
get_timeseries_in_units() (in module nwbwidgets.utils.timeseries)
get_timeseries_maxt() (in module nwbwidgets.utils.timeseries)
get_timeseries_mint() (in module nwbwidgets.utils.timeseries)
get_timeseries_tt() (in module nwbwidgets.utils.timeseries)
get_trials() (nwbwidgets.misc.PSTHWidget method)
(nwbwidgets.misc.UnitsAndTrialsControllerWidget method)
(nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsAbstract method)
get_unobserved_intervals() (in module nwbwidgets.utils.units)
grid_sps() (in module nwbwidgets.utils.mpl)
group_and_sort() (in module nwbwidgets.utils.dynamictable)
(nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
group_dd_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
group_sm_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
GroupAndSortController (class in nwbwidgets.controllers.group_and_sort_controllers)
H
HumanElectrodesPlotlyWidget (class in nwbwidgets.brains)
I
ImageSeriesWidget (class in nwbwidgets.image)
infer_categorical_columns() (in module nwbwidgets.utils.dynamictable)
infer_columns_to_plot() (in module nwbwidgets.utils.dynamictable)
InnerWidget (nwbwidgets.allen.AllenPSTHWidget attribute)
(nwbwidgets.allen.AllenRasterGridWidget attribute)
(nwbwidgets.allen.AllenTuningCurveWidget attribute)
(nwbwidgets.base.TimeIntervalsSelector attribute)
(nwbwidgets.misc.UnitsAndTrialsControllerWidget attribute)
interactive_output() (in module nwbwidgets.utils.widgets)
IVCurveWidget (class in nwbwidgets.icephys)
L
lazy_show_over_data() (in module nwbwidgets.base)
lazy_tabs() (in module nwbwidgets.base)
LazyTab (class in nwbwidgets.base)
limit_bit_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
limit_cb_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
linear_transfer_function() (in module nwbwidgets.utils.cmaps)
list_dandiset_files() (in module nwbwidgets.utils.dandi)
list_dandiset_files_dropdown() (nwbwidgets.panel.Panel method)
list_local_dir_files() (nwbwidgets.panel.Panel method)
load_allen_widgets() (in module nwbwidgets.allen)
load_local_dir_file() (nwbwidgets.panel.Panel method)
load_local_file() (nwbwidgets.panel.Panel method)
M
make_cylinder_mesh() (in module nwbwidgets.brains)
make_cylinders() (in module nwbwidgets.brains)
make_group_and_sort() (nwbwidgets.allen.AllenRasterWidget method)
(nwbwidgets.misc.PSTHWidget method)
(nwbwidgets.misc.RasterWidget method)
(nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsAbstract method)
make_range_slider() (nwbwidgets.controllers.time_window_controllers.RangeController method)
make_trial_event_controller() (in module nwbwidgets.controllers.misc)
matplotlib_transfer_function() (in module nwbwidgets.utils.cmaps)
max_selection() (nwbwidgets.dynamictablesummary.DynamicTableSummaryWidget method)
MemoizeMutable (class in nwbwidgets.utils.functional)
module
nwbwidgets
nwbwidgets.allen
nwbwidgets.analysis
nwbwidgets.analysis.spikes
nwbwidgets.base
nwbwidgets.behavior
nwbwidgets.brains
nwbwidgets.controllers
nwbwidgets.controllers.group_and_sort_controllers
nwbwidgets.controllers.misc
nwbwidgets.controllers.time_window_controllers
nwbwidgets.dynamictablesummary
nwbwidgets.ecephys
nwbwidgets.ephys_viz_interface
nwbwidgets.file
nwbwidgets.icephys
nwbwidgets.image
nwbwidgets.misc
nwbwidgets.ophys
nwbwidgets.panel
nwbwidgets.spectrum
nwbwidgets.timeseries
nwbwidgets.utils
nwbwidgets.utils.cmaps
nwbwidgets.utils.dandi
nwbwidgets.utils.dynamictable
nwbwidgets.utils.functional
nwbwidgets.utils.mpl
nwbwidgets.utils.plotly
nwbwidgets.utils.pynwb
nwbwidgets.utils.testing
nwbwidgets.utils.timeseries
nwbwidgets.utils.units
nwbwidgets.utils.widgets
nwbwidgets.version
nwbwidgets.view
monitor_duration() (nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
monitor_slider() (nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
move_down() (nwbwidgets.controllers.time_window_controllers.RangeController method)
(nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
(nwbwidgets.controllers.time_window_controllers.WindowController method)
move_end() (nwbwidgets.controllers.time_window_controllers.RangeController method)
(nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
(nwbwidgets.controllers.time_window_controllers.WindowController method)
move_start() (nwbwidgets.controllers.time_window_controllers.RangeController method)
(nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
(nwbwidgets.controllers.time_window_controllers.WindowController method)
move_up() (nwbwidgets.controllers.time_window_controllers.RangeController method)
(nwbwidgets.controllers.time_window_controllers.StartAndDurationController method)
(nwbwidgets.controllers.time_window_controllers.WindowController method)
multi_trace() (in module nwbwidgets.utils.plotly)
MultiTimeSeriesWidget (class in nwbwidgets.timeseries)
N
nwb2widget() (in module nwbwidgets.base)
(in module nwbwidgets.view)
nwbwidgets
module
nwbwidgets.allen
module
nwbwidgets.analysis
module
nwbwidgets.analysis.spikes
module
nwbwidgets.base
module
nwbwidgets.behavior
module
nwbwidgets.brains
module
nwbwidgets.controllers
module
nwbwidgets.controllers.group_and_sort_controllers
module
nwbwidgets.controllers.misc
module
nwbwidgets.controllers.time_window_controllers
module
nwbwidgets.dynamictablesummary
module
nwbwidgets.ecephys
module
nwbwidgets.ephys_viz_interface
module
nwbwidgets.file
module
nwbwidgets.icephys
module
nwbwidgets.image
module
nwbwidgets.misc
module
nwbwidgets.ophys
module
nwbwidgets.panel
module
nwbwidgets.spectrum
module
nwbwidgets.timeseries
module
nwbwidgets.utils
module
nwbwidgets.utils.cmaps
module
nwbwidgets.utils.dandi
module
nwbwidgets.utils.dynamictable
module
nwbwidgets.utils.functional
module
nwbwidgets.utils.mpl
module
nwbwidgets.utils.plotly
module
nwbwidgets.utils.pynwb
module
nwbwidgets.utils.testing
module
nwbwidgets.utils.timeseries
module
nwbwidgets.utils.units
module
nwbwidgets.utils.widgets
module
nwbwidgets.version
module
nwbwidgets.view
module
O
observe_left_opacity() (nwbwidgets.brains.HumanElectrodesPlotlyWidget method)
observe_right_opacity() (nwbwidgets.brains.HumanElectrodesPlotlyWidget method)
on_button_click() (nwbwidgets.ophys.PlaneSegmentation2DWidget method)
order_dd_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
P
Panel (class in nwbwidgets.panel)
PlaneSegmentation2DWidget (class in nwbwidgets.ophys)
plot_data() (nwbwidgets.behavior.SpatialSeriesTraceWidget method)
(nwbwidgets.behavior.SpatialSeriesTraceWidget2D method)
(nwbwidgets.behavior.SpatialSeriesTraceWidget3D method)
plot_group() (nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsAbstract method)
plot_grouped_events() (in module nwbwidgets.misc)
plot_grouped_events_plotly() (in module nwbwidgets.misc)
plot_grouped_traces() (in module nwbwidgets.timeseries)
plot_grouped_traces_plotly() (in module nwbwidgets.timeseries)
plot_hist_bar() (nwbwidgets.dynamictablesummary.DynamicTableSummaryWidget method)
plot_human_brain() (nwbwidgets.brains.HumanElectrodesPlotlyWidget method)
plot_spectrum_figure() (in module nwbwidgets.spectrum)
plot_traces() (in module nwbwidgets.timeseries)
plot_unobserved_intervals() (in module nwbwidgets.misc)
processing_module() (in module nwbwidgets.base)
ProgressBar (class in nwbwidgets.controllers.misc)
psth() (in module nwbwidgets.analysis.spikes)
PSTHWidget (class in nwbwidgets.misc)
R
range_controller_observer() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
RangeController (class in nwbwidgets.controllers.time_window_controllers)
raster_grid() (in module nwbwidgets.misc)
RasterGridWidget (class in nwbwidgets.misc)
RasterWidget (class in nwbwidgets.misc)
RasterWidgetPlotly (class in nwbwidgets.misc)
render_dataframe() (in module nwbwidgets.base)
reset_dropdown() (nwbwidgets.dynamictablesummary.DynamicTableSummaryWidget method)
robust_unique() (in module nwbwidgets.utils.pynwb)
RoiResponseSeriesWidget (class in nwbwidgets.ophys)
route_plane_segmentation() (in module nwbwidgets.ophys)
route_spatial_series() (in module nwbwidgets.behavior)
row_to_hover_text() (in module nwbwidgets.base)
rows_callback() (nwbwidgets.misc.UnitsAndTrialsControllerWidget method)
S
SeparateTracesPlotlyWidget (class in nwbwidgets.timeseries)
set_children() (nwbwidgets.timeseries.AbstractTraceWidget method)
set_controls() (nwbwidgets.image.ImageSeriesWidget method)
(nwbwidgets.timeseries.AbstractTraceWidget method)
set_group_by() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
set_out_fig() (nwbwidgets.behavior.SpatialSeriesTraceWidget method)
(nwbwidgets.image.ImageSeriesWidget method)
(nwbwidgets.timeseries.AbstractTraceWidget method)
(nwbwidgets.timeseries.SeparateTracesPlotlyWidget method)
(nwbwidgets.timeseries.SingleTracePlotlyWidget method)
set_plotly_callbacks() (in module nwbwidgets.utils.widgets)
show_annotations() (in module nwbwidgets.misc)
show_behavioral_events() (in module nwbwidgets.behavior)
show_ccf() (in module nwbwidgets.ecephys)
show_decomposition_series() (in module nwbwidgets.misc)
show_decomposition_traces() (in module nwbwidgets.misc)
show_df_over_f() (in module nwbwidgets.ophys)
show_dict() (in module nwbwidgets.base)
show_dset() (in module nwbwidgets.base)
show_dynamic_table() (in module nwbwidgets.view)
show_electrodes() (in module nwbwidgets.ecephys)
(nwbwidgets.brains.HumanElectrodesPlotlyWidget method)
show_fields() (in module nwbwidgets.base)
show_grayscale_image() (in module nwbwidgets.image)
show_grayscale_image_series() (in module nwbwidgets.image)
show_grayscale_volume() (in module nwbwidgets.ophys)
show_histogram() (in module nwbwidgets.misc)
show_image_segmentation() (in module nwbwidgets.ophys)
show_image_series() (in module nwbwidgets.image)
show_index_series() (in module nwbwidgets.image)
show_indexed_timeseries_mpl() (in module nwbwidgets.timeseries)
show_indexed_timeseries_plotly() (in module nwbwidgets.timeseries)
show_multi_container_interface() (in module nwbwidgets.base)
show_neurodata_base() (in module nwbwidgets.base)
show_nwbfile() (in module nwbwidgets.file)
show_plane_segmentation_2d() (nwbwidgets.ophys.PlaneSegmentation2DWidget method)
show_plane_segmentation_3d_mask() (in module nwbwidgets.ophys)
show_plane_segmentation_3d_voxel() (in module nwbwidgets.ophys)
show_psth_raster() (in module nwbwidgets.misc)
show_psth_smoothed() (in module nwbwidgets.misc)
show_rbga_image() (in module nwbwidgets.image)
show_sequential_recordings() (in module nwbwidgets.icephys)
show_session_raster() (in module nwbwidgets.misc)
show_session_raster_plotly() (in module nwbwidgets.misc)
show_single_sweep_sequence() (in module nwbwidgets.icephys)
show_spatial_series() (in module nwbwidgets.behavior)
show_spectrogram() (in module nwbwidgets.ecephys)
show_spectrum() (in module nwbwidgets.spectrum)
show_spike_event_series() (in module nwbwidgets.ecephys)
show_sweep_sequence_reps() (in module nwbwidgets.icephys)
show_sweep_sequences() (in module nwbwidgets.icephys)
show_text_fields() (in module nwbwidgets.base)
show_timeseries() (in module nwbwidgets.timeseries)
show_timeseries_mpl() (in module nwbwidgets.timeseries)
show_ts_fields() (in module nwbwidgets.timeseries)
SingleTracePlotlyWidget (class in nwbwidgets.timeseries)
sort_mixed_type_list() (in module nwbwidgets.misc)
SpatialSeriesTraceWidget (class in nwbwidgets.behavior)
SpatialSeriesTraceWidget2D (class in nwbwidgets.behavior)
SpatialSeriesTraceWidget3D (class in nwbwidgets.behavior)
StartAndDurationController (class in nwbwidgets.controllers.time_window_controllers)
stimulus_type_dd_callback() (nwbwidgets.base.TimeIntervalsSelector method)
stream_dandiset_file() (nwbwidgets.panel.Panel method)
stream_s3_file() (nwbwidgets.panel.Panel method)
T
time_to_index() (nwbwidgets.image.ImageSeriesWidget method)
TimeIntervalsSelector (class in nwbwidgets.base)
Timer (class in nwbwidgets.utils.widgets)
timeseries_time_to_ind() (in module nwbwidgets.utils.timeseries)
toggle_legend() (nwbwidgets.misc.RasterWidgetPlotly method)
trial_align_spatial_series() (in module nwbwidgets.behavior)
TuningCurveExtendedWidget (class in nwbwidgets.misc)
TuningCurveWidget (class in nwbwidgets.misc)
TwoPhotonSeriesWidget (class in nwbwidgets.ophys)
U
UnitsAndTrialsControllerWidget (class in nwbwidgets.misc)
unpack_controls() (in module nwbwidgets.utils.widgets)
update() (nwbwidgets.misc.PSTHWidget method)
(nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsConstant method)
(nwbwidgets.timeseries.AlignMultiTraceTimeSeriesByTrialsVariable method)
update_electrode() (nwbwidgets.icephys.IVCurveWidget method)
update_fig() (nwbwidgets.misc.RasterWidgetPlotly method)
(nwbwidgets.ophys.PlaneSegmentation2DWidget method)
update_figure() (nwbwidgets.icephys.IVCurveWidget method)
update_plot() (nwbwidgets.behavior.SpatialSeriesTraceWidget method)
(nwbwidgets.behavior.SpatialSeriesTraceWidget2D method)
(nwbwidgets.behavior.SpatialSeriesTraceWidget3D method)
update_stimulus() (nwbwidgets.icephys.IVCurveWidget method)
update_value() (nwbwidgets.controllers.group_and_sort_controllers.GroupAndSortController method)
updated_source() (nwbwidgets.panel.Panel method)
V
vis2widget() (in module nwbwidgets.base)
W
WindowController (class in nwbwidgets.controllers.time_window_controllers)
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